.. _cli:

Command Line Interface
#######################
.. note::
    Detailed information about the functions can be found in the `pipeline <pipeline.html>`_.

The genrisk command line interface includes multiple commands which can be used as follows:

.. click:: genrisk.cli:score_genes
    :prog: genrisk score-genes

.. click:: genrisk.cli:normalize
    :prog: genrisk normalize

.. click:: genrisk.cli:find_association
    :prog: genrisk find-association

.. click:: genrisk.cli:visualize
    :prog: genrisk visualize

.. click:: genrisk.cli:create_model
    :prog: genrisk create-model

.. click:: genrisk.cli:test_model
    :prog: genrisk test-model

.. click:: genrisk.cli:get_prs
    :prog: genrisk get-prs